PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 526aa    MW: 60128.9 Da    PI: 4.5228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.65e-451565242373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL +  ea+++++ ela+ lL  +s+ +sp g++++Rla+     L++   +      +    +++s    ++   a+k+f++++P+ kf+++
  XP_015897412.1 156 KHLLQAYGEAMEKNQRELAEVLLRCISDKVSPLGEAFERLAFN----LSKEAEE------QGNYLKQAS---LKNFDDAYKAFNQIFPYEKFAYF 237
                     68899999*********************************97....5555555......222234444...66677899*************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakr 185
                     taN+aIlea+ g+ e++HiiDfd+ +GlQW+ +++a a+R++g   l++T ++  e++     ++   eet+++L + A+++g+++e + +   r
  XP_015897412.1 238 TANSAILEALPGDaETIHIIDFDL-EGLQWAQMIEAAAQRQKG---LKLTSIKMDEEEadfapQQWGFEETKRKLLDHAKTFGLKLEVKEV---R 325
                     ************989********8.7**************999...******998877899*9999***********************98...7 PP

            GRAS 186 ledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe.adh..nsesFlerfleale 262
                     +edl ++e++  +     +E la n++ +l ++   +v ++++  e+L++ k+l ++          ++++ + + ++   n +sF   f  +le
  XP_015897412.1 326 IEDL-VNEIKRTKkrgggREFLAFNCMAELPHMR--RVRSRKHVMEFLRVAKDLLSNsanckssyrgIIILGDGDpCEKlsNCSSFSPFFNGCLE 417
                     8888.55554333377889**************7..788888899******999665444555566689999998866557999*********** PP

            GRAS 263 yysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.ees 355
                     +y al++s+e+++p    e+r+ +E  ++ + i++    ++ +  e +e +    +    +G++  +ls++  ++ak +lr+  s   ++e ++ 
  XP_015897412.1 418 HYQALLESMESSFPIRLaEARMAMECLFIWPYISSQAWYQKWK--EIKEGF----HLQAGFGLEGWRLSKESLMEAKEMLREETSYRVKIEgQNG 506
                     **************776699*******9999999987777776..555555....34556888999****************9955566665556 PP

            GRAS 356 gslvlgWkdrpLvsvSaW 373
                     +++ l W d pLv vS W
  XP_015897412.1 507 NEMSLEWGDIPLVRVSTW 524
                     6777************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.793129504IPR005202Transcription factor GRAS
PfamPF035141.7E-42156524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MMQPELVQPS SWPLYNVADS PFDNLGQYYN LTMDSHDDDF EFSSLYTTIE SYSELSQNPF  60
SSMFSGEPVQ IAVCDDPLKG MSPMEDLSLS GEIEGIWEES VGSFPSHQFS NSIEINDLWS  120
PSSSMKSESR TDVTSIQRSL TLPGENMEIE NELSVKHLLQ AYGEAMEKNQ RELAEVLLRC  180
ISDKVSPLGE AFERLAFNLS KEAEEQGNYL KQASLKNFDD AYKAFNQIFP YEKFAYFTAN  240
SAILEALPGD AETIHIIDFD LEGLQWAQMI EAAAQRQKGL KLTSIKMDEE EADFAPQQWG  300
FEETKRKLLD HAKTFGLKLE VKEVRIEDLV NEIKRTKKRG GGREFLAFNC MAELPHMRRV  360
RSRKHVMEFL RVAKDLLSNS ANCKSSYRGI IILGDGDPCE KLSNCSSFSP FFNGCLEHYQ  420
ALLESMESSF PIRLAEARMA MECLFIWPYI SSQAWYQKWK EIKEGFHLQA GFGLEGWRLS  480
KESLMEAKEM LREETSYRVK IEGQNGNEMS LEWGDIPLVR VSTWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1622242780270GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897412.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLW9QTU40.0W9QTU4_9R
STRINGPOPTR_0016s13050.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-20GRAS family protein